Metabolitics¶
…
Documentation¶
The documentation of the project avaiable in http://metabolitics.rtfd.io .
API Documentation¶
Analysis¶
-
class
metabolitics.analysis.
MetaboliticsAnalysis
(model, without_transports=True, timeout=600)[source]¶ Metabolitics analysis for metabolic dataset.
-
add_constraint
(measured_metabolites)[source]¶ Add measurements as constraint to model.
Parameters: measured_metabolites (dict) – dict in which keys are metabolite names and values are float numbers represent fold changes in metabolites.
-
Preprocessing¶
Utils¶
Extensions¶
This packages includes extension methods for cobra models.
-
metabolitics.extensions.
is_transport_subsystem
¶ staticmethod(function) -> method
Convert a function to be a static method.
A static method does not receive an implicit first argument. To declare a static method, use this idiom:
- class C:
@staticmethod def f(arg1, arg2, …):
…
It can be called either on the class (e.g. C.f()) or on an instance (e.g. C().f()). The instance is ignored except for its class.
Static methods in Python are similar to those found in Java or C++. For a more advanced concept, see the classmethod builtin.